PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10028218m

Common Name

EUTSA_v10028218mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

GeBP

Protein Properties

Length: 231aa MW: 26500.5 Da PI: 9.5703

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10028218m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	66.5	5.9e-21	21	106	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++lw ++De +lLqG idf g p+ d ++f+++v++sisf++s+++++eK++rLK K+ ++++k g sf+k+hd+ +f s+ +Wg Thhalv10028218m 21 ESLWKKHDEKLLLQGAIDF----GECPFGDKEGFHRQVEGSISFEASTNEIIEKLKRLKMKYLDNKRK---GV-ESFKKAHDEFCFLASNHLWG 106 689**************....99************************************999...54.59***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.3E-15	22	106	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
GPSQGTSLRV KQEEKNPPIY ESLWKKHDEK LLLQGAIDFG ECPFGDKEGF HRQVEGSISF 60 EASTNEIIEK LKRLKMKYLD NKRKGVESFK KAHDEFCFLA SNHLWGPGGI YAKEKKNKTS 120 KAKKKNEPSK GKKKNETSKV KKKEEVVKEE EEEDKKVGWV LAEDWFEKSY VVGSIAGSGI 180 DEEAVKAGWR MAPMEEKKKI EEEWRALQLK ELSFLSLKME FLLEVTKMLK *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006405843.1	1e-164	hypothetical protein EUTSA_v10028218mg, partial
TrEMBL	V4NLJ8	1e-164	V4NLJ8_EUTSA; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	6e-25	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Thhalv10028218m
Entrez Gene	18022418