![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10028218m | ||||||||
Common Name | EUTSA_v10028218mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 231aa MW: 26500.5 Da PI: 9.5703 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 66.5 | 5.9e-21 | 21 | 106 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++lw ++De +lLqG idf g p+ d ++f+++v++sisf++s+++++eK++rLK K+ ++++k g sf+k+hd+ +f s+ +Wg Thhalv10028218m 21 ESLWKKHDEKLLLQGAIDF----GECPFGDKEGFHRQVEGSISFEASTNEIIEKLKRLKMKYLDNKRK---GV-ESFKKAHDEFCFLASNHLWG 106 689****************....99****************************************999...54.59*****************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.3E-15 | 22 | 106 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
GPSQGTSLRV KQEEKNPPIY ESLWKKHDEK LLLQGAIDFG ECPFGDKEGF HRQVEGSISF 60 EASTNEIIEK LKRLKMKYLD NKRKGVESFK KAHDEFCFLA SNHLWGPGGI YAKEKKNKTS 120 KAKKKNEPSK GKKKNETSKV KKKEEVVKEE EEEDKKVGWV LAEDWFEKSY VVGSIAGSGI 180 DEEAVKAGWR MAPMEEKKKI EEEWRALQLK ELSFLSLKME FLLEVTKMLK * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405843.1 | 1e-164 | hypothetical protein EUTSA_v10028218mg, partial | ||||
TrEMBL | V4NLJ8 | 1e-164 | V4NLJ8_EUTSA; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00390.1 | 6e-25 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10028218m |
Entrez Gene | 18022418 |